3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01571

Details:

PFam ID : PF01571

PFam Domain Description : Aminomethyltransferase folate-binding domain

Number of Sequence in 50% Dataset : 416

Number of Sequence in Full Dataset : 2824

Average sequence length: 194.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01571	B5RXL9_RALSO_69_132	64.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01571	A3J000_9CHRO_1_108	100

Sequence based PCA Plot of the family - PF01571 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=78 Length=8
Motif3 Start=19 Length=8
Motif4 Start=121 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay