3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01570

Details:

PFam ID : PF01570

PFam Domain Description : Flavodoxin

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 84

Average sequence length: 76.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01570	Q5I3B7_9FLAV_3_65	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01570	B5TJM4_9FLAV_118_156	90.3

Sequence based PCA Plot of the family - PF01570 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay