3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01568

Details:

PFam ID : PF01568

PFam Domain Description : Molydopterin dinucleotide binding domain

Number of Sequence in 50% Dataset : 366

Number of Sequence in Full Dataset : 3821

Average sequence length: 111.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01568	Q65550_9VIRU_1_220	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01568	C6IY60_9BACL_1_43	99.8

Sequence based PCA Plot of the family - PF01568 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=4 Length=8
Motif2 Start=37 Length=8
Motif3 Start=65 Length=11
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay