3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01567

Details:

PFam ID : PF01567

PFam Domain Description : Hantavirus glycoprotein G1

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 50

Average sequence length: 241.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01567	Q65550_9VIRU_1_220	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01567	A7YII4_9VIRU_22_529	100

Sequence based PCA Plot of the family - PF01567 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=342 Length=14
Motif2 Start=441 Length=8
Motif3 Start=3 Length=8
Motif4 Start=458 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay