3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01566

Details:

PFam ID : PF01566

PFam Domain Description : Natural resistance-associated macrophage protein

Number of Sequence in 50% Dataset : 175

Number of Sequence in Full Dataset : 1362

Average sequence length: 329.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01566	B5JLP5_9BACT_47_231	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01566	E2ZAL0_9FIRM_1_86	100

Sequence based PCA Plot of the family - PF01566 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=163 Length=8
Motif2 Start=8 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay