3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01563

Details:

PFam ID : PF01563

PFam Domain Description : Alphavirus E3 glycoprotein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 39

Average sequence length: 55.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01563	Q9WC27_9VIRU_284_338	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01563	POLS_SLDV_297_354	100

Sequence based PCA Plot of the family - PF01563 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=18 Length=27
Motif2 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay