3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01561

Details:

PFam ID : PF01561

PFam Domain Description : Hantavirus glycoprotein G2

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 76

Average sequence length: 209.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01561	A6MD75_9VIRU_639_1121	35.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01561	B0FGW2_9VIRU_1_119	100

Sequence based PCA Plot of the family - PF01561 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=67 Length=8
Motif2 Start=112 Length=22
Motif3 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay