3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01560

Details:

PFam ID : PF01560

PFam Domain Description : Hepatitis C virus non-structural protein E2/NS1

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 3880

Average sequence length: 99.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01560	Q20JT0_9HEPC_1_46	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01560	Q80HQ4_9HEPC_17_45	94.3

Sequence based PCA Plot of the family - PF01560 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay