3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01559

Details:

PFam ID : PF01559

PFam Domain Description : Zein seed storage protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 89

Average sequence length: 122.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01559	C5Y6C7_SORBI_18_58	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01559	Q7M1N0_TRIDA_2_21	100

Sequence based PCA Plot of the family - PF01559 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay