3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01556

Details:

PFam ID : PF01556

PFam Domain Description : DnaJ C terminal domain

Number of Sequence in 50% Dataset : 181

Number of Sequence in Full Dataset : 3458

Average sequence length: 78.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01556	F1A4U8_DICPU_1_52	85.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01556	Q4GZ96_9TRYP_344_445	100

Sequence based PCA Plot of the family - PF01556 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=37 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay