3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01554

Details:

PFam ID : PF01554

PFam Domain Description : MatE

Number of Sequence in 50% Dataset : 0

Number of Sequence in Full Dataset : 11187

Average sequence length: 159.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01554	B4DHC0_HUMAN_70_176	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01554	Q491Q8_STRP1_229_323	18

Sequence based PCA Plot of the family - PF01554 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay