3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01547

Details:

PFam ID : PF01547

PFam Domain Description : Bacterial extracellular solute-binding protein

Number of Sequence in 50% Dataset : 1430

Number of Sequence in Full Dataset : 3751

Average sequence length: 291.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01547	B7ARL4_9BACE_76_482	64.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01547	D2YSJ9_VIBMI_26_120	99.1

Sequence based PCA Plot of the family - PF01547 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=143 Length=8
Motif3 Start=299 Length=11
Motif4 Start=122 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay