3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01545

Details:

PFam ID : PF01545

PFam Domain Description : Cation efflux family

Number of Sequence in 50% Dataset : 807

Number of Sequence in Full Dataset : 4223

Average sequence length: 267.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01545	D8LFT1_ECTSI_81_572	71.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01545	B1L4B0_KORCO_265_355	100

Sequence based PCA Plot of the family - PF01545 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=127 Length=8
Motif3 Start=25 Length=8
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay