3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01544

Details:

PFam ID : PF01544

PFam Domain Description : CorA-like Mg2+ transporter protein

Number of Sequence in 50% Dataset : 668

Number of Sequence in Full Dataset : 2292

Average sequence length: 254.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01544	D2VWU4_NAEGR_163_522	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01544	A5FGJ8_FLAJ1_31_161	100

Sequence based PCA Plot of the family - PF01544 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=12 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay