3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01543

Details:

PFam ID : PF01543

PFam Domain Description : Hepatitis C virus capsid protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 263

Average sequence length: 96.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01543	B1PQ71_9HEPC_1_38	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01543	Q5I9E8_9HEPC_2_26	100

Sequence based PCA Plot of the family - PF01543 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay