3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01542

Details:

PFam ID : PF01542

PFam Domain Description : Hepatitis C virus core protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 48

Average sequence length: 46.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01542	A3FKQ5_9HEPC_1_21	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01542	F1A759_9HEPC_1_58	100

Sequence based PCA Plot of the family - PF01542 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay