3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01541

Details:

PFam ID : PF01541

PFam Domain Description : GIY-YIG catalytic domain

Number of Sequence in 50% Dataset : 356

Number of Sequence in Full Dataset : 2909

Average sequence length: 79.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01541	Q4F8Q4_AEDAE_233_322	99.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01541	A7RAV0_PBCVA_35_103	99.9

Sequence based PCA Plot of the family - PF01541 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=59 Length=8
Motif2 Start=23 Length=8
Motif3 Start=1 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay