3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01539

Details:

PFam ID : PF01539

PFam Domain Description : Hepatitis C virus envelope glycoprotein E1

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 818

Average sequence length: 109.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01539	Q8B778_9HEPC_1_33	29.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01539	C0SUM0_9HEPC_193_273	100

Sequence based PCA Plot of the family - PF01539 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=30 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay