3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01536

Details:

PFam ID : PF01536

PFam Domain Description : Adenosylmethionine decarboxylase

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 279

Average sequence length: 287.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01536	O22497_IPONI_1_108	80.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01536	Q7RFF2_PLAYO_462_630	100

Sequence based PCA Plot of the family - PF01536 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=75 Length=22
Motif3 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay