3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01534

Details:

PFam ID : PF01534

PFam Domain Description : Frizzled/Smoothened family membrane region

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 243

Average sequence length: 237.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01534	E7F535_DANRE_1_32	93.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01534	B7Q4R2_IXOSC_151_494	100

Sequence based PCA Plot of the family - PF01534 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay