3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01533

Details:

PFam ID : PF01533

PFam Domain Description : Tospovirus nucleocapsid protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 32

Average sequence length: 205.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01533	D3YKV8_9VIRU_1_75	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01533	D2Y160_INSV_1_179	100

Sequence based PCA Plot of the family - PF01533 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay