3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01532

Details:

PFam ID : PF01532

PFam Domain Description : Glycosyl hydrolase family 47

Number of Sequence in 50% Dataset : 229

Number of Sequence in Full Dataset : 769

Average sequence length: 386.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01532	B9XGT5_9BACT_106_269	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01532	C1H545_PARBA_137_229	100

Sequence based PCA Plot of the family - PF01532 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=304 Length=8
Motif2 Start=2 Length=22
Motif3 Start=531 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay