3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01531

Details:

PFam ID : PF01531

PFam Domain Description : Glycosyl transferase family 11

Number of Sequence in 50% Dataset : 180

Number of Sequence in Full Dataset : 309

Average sequence length: 238

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01531	B9XGT5_9BACT_106_269	99.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01531	Q5M4A0_STRT2_1_328	100

Sequence based PCA Plot of the family - PF01531 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay