3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01530

Details:

PFam ID : PF01530

PFam Domain Description : Zinc finger, C2HC type

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 104

Average sequence length: 30.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01530	B4DFB4_HUMAN_111_132	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01530	E9QEP5_DANRE_69_91	99.0

Sequence based PCA Plot of the family - PF01530 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay