3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01529

Details:

PFam ID : PF01529

PFam Domain Description : DHHC palmitoyltransferase

Number of Sequence in 50% Dataset : 775

Number of Sequence in Full Dataset : 1998

Average sequence length: 168.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01529	B9PHZ6_TOXGO_94_526	99.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01529	C6YXK4_ORYSJ_1_45	100

Sequence based PCA Plot of the family - PF01529 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=98 Length=8
Motif2 Start=267 Length=11
Motif3 Start=163 Length=8
Motif4 Start=176 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay