3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01527

Details:

PFam ID : PF01527

PFam Domain Description : Transposase

Number of Sequence in 50% Dataset : 415

Number of Sequence in Full Dataset : 2976

Average sequence length: 75.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01527	D6ID97_ECOLX_1_42	95.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01527	D2RK22_ACIFV_14_83	100

Sequence based PCA Plot of the family - PF01527 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=20
Motif2 Start=25 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay