3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01521

Details:

PFam ID : PF01521

PFam Domain Description : Iron-sulphur cluster biosynthesis

Number of Sequence in 50% Dataset : 195

Number of Sequence in Full Dataset : 1801

Average sequence length: 90.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01521	Q4DPR5_TRYCR_31_91	52.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01521	B6AJT8_CRYMR_20_130	99.5

Sequence based PCA Plot of the family - PF01521 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay