3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01520

Details:

PFam ID : PF01520

PFam Domain Description : N-acetylmuramoyl-L-alanine amidase

Number of Sequence in 50% Dataset : 491

Number of Sequence in Full Dataset : 2064

Average sequence length: 189.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01520	A6LWP0_CLOB8_5_119	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01520	D6T4B8_STAAU_5_84	100

Sequence based PCA Plot of the family - PF01520 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=169 Length=8
Motif2 Start=141 Length=17
Motif3 Start=70 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay