3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01517

Details:

PFam ID : PF01517

PFam Domain Description : Hepatitis delta virus delta antigen

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 163

Average sequence length: 105.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01517	Q760F6_HDV_1_194	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01517	Q760F6_HDV_1_194	100

Sequence based PCA Plot of the family - PF01517 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=82 Length=8
Motif3 Start=50 Length=8
Motif4 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay