3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01513

Details:

PFam ID : PF01513

PFam Domain Description : ATP-NAD kinase

Number of Sequence in 50% Dataset : 379

Number of Sequence in Full Dataset : 2097

Average sequence length: 257.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01513	E9BZ01_9EUKA_126_491	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01513	Q0FAH7_9RHOB_9_79	100

Sequence based PCA Plot of the family - PF01513 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=126 Length=8
Motif2 Start=1 Length=8
Motif3 Start=87 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay