3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01510

Details:

PFam ID : PF01510

PFam Domain Description : N-acetylmuramoyl-L-alanine amidase

Number of Sequence in 50% Dataset : 284

Number of Sequence in Full Dataset : 2200

Average sequence length: 139.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01510	C1B9E7_RHOOB_14_143	98.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01510	D3AUA0_9CLOT_1_90	99.1

Sequence based PCA Plot of the family - PF01510 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=48 Length=17
Motif2 Start=73 Length=8
Motif3 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay