3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01509

Details:

PFam ID : PF01509

PFam Domain Description : TruB family pseudouridylate synthase (N terminal domain)

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 1577

Average sequence length: 140.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01509	A4W1P4_STRS2_1_41	68

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01509	D3R083_CLOB3_25_209	100

Sequence based PCA Plot of the family - PF01509 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=29
Motif2 Start=88 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay