3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01506

Details:

PFam ID : PF01506

PFam Domain Description : Hepatitis C virus non-structural 5a protein membrane anchor

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 111

Average sequence length: 22.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01506	A1JWP3_9HEPC_1_17	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01506	A1JWP3_9HEPC_1_17	90

Sequence based PCA Plot of the family - PF01506 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay