3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01505

Details:

PFam ID : PF01505

PFam Domain Description : Major Vault Protein repeat

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 207

Average sequence length: 43.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01505	E4YIC5_OIKDI_19_54	30.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01505	Q38C44_9TRYP_110_170	87

Sequence based PCA Plot of the family - PF01505 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay