3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01501

Details:

PFam ID : PF01501

PFam Domain Description : Glycosyl transferase family 8

Number of Sequence in 50% Dataset : 543

Number of Sequence in Full Dataset : 1558

Average sequence length: 230.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01501	A8ZSD8_DESOH_57_247	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01501	D7SJN4_VITVI_2_128	99.9

Sequence based PCA Plot of the family - PF01501 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay