3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01500

Details:

PFam ID : PF01500

PFam Domain Description : Keratin, high sulfur B2 protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 41

Average sequence length: 89.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01500	D2HR42_AILME_37_128	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01500	D2HR44_AILME_56_110	100

Sequence based PCA Plot of the family - PF01500 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=8
Motif2 Start=53 Length=8
Motif3 Start=77 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay