3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01499

Details:

PFam ID : PF01499

PFam Domain Description : Herpesvirus UL25 family

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 52

Average sequence length: 465.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01499	O92584_SHV2_14_194	89.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01499	UL25_PSHV1_16_603	100

Sequence based PCA Plot of the family - PF01499 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=466 Length=11
Motif2 Start=8 Length=8
Motif3 Start=174 Length=8
Motif4 Start=486 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay