3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01498

Details:

PFam ID : PF01498

PFam Domain Description : Transposase

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 266

Average sequence length: 63.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01498	B2WPS5_PYRTR_101_176	61.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01498	E6ZT28_9BASI_68_137	98.8

Sequence based PCA Plot of the family - PF01498 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay