3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01496

Details:

PFam ID : PF01496

PFam Domain Description : V-type ATPase 116kDa subunit family

Number of Sequence in 50% Dataset : 357

Number of Sequence in Full Dataset : 1167

Average sequence length: 403.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01496	Q5UXZ3_HALMA_65_190	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01496	D0BMW9_9LACT_434_542	100

Sequence based PCA Plot of the family - PF01496 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=174 Length=8
Motif4 Start=188 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay