3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01493

Details:

PFam ID : PF01493

PFam Domain Description : GXGXG motif

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 1416

Average sequence length: 182.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01493	Q6KZ05_PICTO_295_545	92.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01493	Q6M147_METMP_27_245	100

Sequence based PCA Plot of the family - PF01493 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=89 Length=8
Motif2 Start=108 Length=14
Motif3 Start=199 Length=11
Motif4 Start=172 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay