3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01492

Details:

PFam ID : PF01492

PFam Domain Description : Geminivirus C4 protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 425

Average sequence length: 80.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01492	Q809H6_9GEMI_1_51	8.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01492	Q645G9_9GEMI_1_85	91.7

Sequence based PCA Plot of the family - PF01492 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay