3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01491

Details:

PFam ID : PF01491

PFam Domain Description : Frataxin-like domain

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 342

Average sequence length: 106.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01491	A9V6Y3_MONBE_1_57	98.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01491	Q4P635_USTMA_81_214	100

Sequence based PCA Plot of the family - PF01491 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=68 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay