3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01490 Details: PFam ID : PF01490 PFam Domain Description : Transmembrane amino acid transporter protein Number of Sequence in 50% Dataset : 958 Number of Sequence in Full Dataset : 2758 Average sequence length: 329.3 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01490E5SCC9_TRISP_6_49078.6 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01490Q58T38_VITVI_1_16699.8 Sequence based PCA Plot of the family - PF01490 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=18 Length=17Motif2 Start=114 Length=8Motif3 Start=324 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF01490
PFam Domain Description : Transmembrane amino acid transporter protein
Number of Sequence in 50% Dataset : 958
Number of Sequence in Full Dataset : 2758
Average sequence length: 329.3
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER