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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01490
Details:

PFam ID : PF01490

PFam Domain Description : Transmembrane amino acid transporter protein

Number of Sequence in 50% Dataset : 958

Number of Sequence in Full Dataset : 2758

Average sequence length: 329.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01490E5SCC9_TRISP_6_49078.6
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01490Q58T38_VITVI_1_16699.8
Sequence based PCA Plot of the family - PF01490 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=17
Motif2 Start=114 Length=8
Motif3 Start=324 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay