3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01487

Details:

PFam ID : PF01487

PFam Domain Description : Type I 3-dehydroquinase

Number of Sequence in 50% Dataset : 199

Number of Sequence in Full Dataset : 584

Average sequence length: 213.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01487	F0GLR2_9LACO_17_141	94.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01487	Q6BKY5_DEBHA_259_527	100

Sequence based PCA Plot of the family - PF01487 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=115 Length=8
Motif2 Start=223 Length=19
Motif3 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay