3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01486

Details:

PFam ID : PF01486

PFam Domain Description : K-box region

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 1766

Average sequence length: 97.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01486	A7KIG4_9MAGN_71_181	21.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01486	Q9SEE0_PICAB_93_167	100

Sequence based PCA Plot of the family - PF01486 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=83 Length=11
Motif4 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay