3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01485

Details:

PFam ID : PF01485

PFam Domain Description : IBR domain

Number of Sequence in 50% Dataset : 284

Number of Sequence in Full Dataset : 1693

Average sequence length: 66.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01485	B3G3Y7_ADIVA_454_522	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01485	Q235W5_TETTH_139_217	100

Sequence based PCA Plot of the family - PF01485 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=36 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay