3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01478

Details:

PFam ID : PF01478

PFam Domain Description : Type IV leader peptidase family

Number of Sequence in 50% Dataset : 640

Number of Sequence in Full Dataset : 1764

Average sequence length: 110.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01478	D3QAM7_STANL_7_170	95.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01478	E1L2L7_9ACTN_44_202	98.5

Sequence based PCA Plot of the family - PF01478 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=193 Length=8
Motif4 Start=182 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay