3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01476

Details:

PFam ID : PF01476

PFam Domain Description : LysM domain

Number of Sequence in 50% Dataset : 379

Number of Sequence in Full Dataset : 7754

Average sequence length: 44.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01476	A6TVJ7_ALKMQ_33_77	60.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01476	Q5ZWG3_LEGPH_384_427	99.6

Sequence based PCA Plot of the family - PF01476 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=41 Length=8
Motif2 Start=1 Length=29

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay