3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01475

Details:

PFam ID : PF01475

PFam Domain Description : Ferric uptake regulator family

Number of Sequence in 50% Dataset : 419

Number of Sequence in Full Dataset : 2656

Average sequence length: 117.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01475	C4XDP2_KLEPN_9_97	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01475	E6SKV4_THEM7_20_156	100

Sequence based PCA Plot of the family - PF01475 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=75 Length=8
Motif2 Start=24 Length=8
Motif3 Start=3 Length=8
Motif4 Start=41 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay