3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01474

Details:

PFam ID : PF01474

PFam Domain Description : Class-II DAHP synthetase family

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 485

Average sequence length: 357.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01474	B4FLF2_MAIZE_3_131	65.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01474	Q570U9_ARATH_51_251	100

Sequence based PCA Plot of the family - PF01474 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=78 Length=8
Motif2 Start=1 Length=8
Motif3 Start=16 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay